16S Classifier
Fast and Accurate Taxonomic Classification of 16S rRNA Sequences


The links to download individual models for offline usage will be active once the manucript has been published.

Instructions for running the stand-alone version of 16S Classifier on the Linux PC.

1. User can download zip file of a particular hypervariable region or complete 16S, which is freely available at http://metagenomics.iiserb.ac.in/16Sclassifier/download.html

2. Extract the zipped file which contains a model file (*.Rdata), a script file (*.sh) and an exe file (16sclassifier.exe).

Other dependencies:

1. User has to install R from the following link http://cran.r-project.org/

2. intall Randomforest by typing the following commands in terminal  R  and install.packages ('randomForest')

# Command line usage #

./16sclassifier.exe 'queryfile' 'modelname'

The query file should be in Fasta format and the model name could be v2, v3, v4, v5, v6, v7, v8, v23, v34, v35, v45, v56, v67, v78 and Complete16S.

In case of any help you can contact at: ashok@iiserb.ac.in